DreEX6056960 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6185242-6185910:+
Coord C1 exon
chr14:6185242-6185366
Coord A exon
chr14:6185451-6185549
Coord C2 exon
chr14:6185626-6185910
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCAATTTTGTGTTAACAGTGA
3' ss Score
5.21
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
ATCGTTCTTCCTGCTGTGTTTGTGTGCATCGCTCTGGTATTCAGTCTCATTGTGCCGCCATTTGGGAAATATCCCAGCCTGGCTCTTAATCCCTGGATGTATGAAGAGCAGTTCATGTTCTTCAG
Seq A exon
TGAAGATGCTCCTTATGACGTAAGCACACATAAGTTGCTCAGAGCTCTGTTTGATGATCCTGGCTTTGGAACACGATGCATGAAAGGAGAATCAATTCC
Seq C2 exon
GGATGCTCCCTGTACAATGGGCGATGAGGAATGGTCTACACCAGAAGTGCCAGAAAGCATAATAGAGATTTTAACAACAAGGAACTGGACTATGAATGACCCATCGCCTGCTTGTGAGTGCAGCTGTAATGGCAAAAAGAAGATGCTCCCAGAATGCCCTGCGGGTGCAGGCGGTCTCCCACCTCCTCAGATTAAGATCAGTGAAACTGAGACTCTCCAGAACCTGACAGGACGAAACATCTCAGACTATCTAGTGAAGACCTACGCACAGATCATTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'35-39,'35-37,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGTGTTTGTGTGCAT
R:
GCTTTCTGGCACTTCTGGTGT
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]