DreEX0009953 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38674810-38675838:+
Coord C1 exon
chr12:38674810-38674901
Coord A exon
chr12:38674986-38675161
Coord C2 exon
chr12:38675763-38675838
Length
176 bp
Sequences
Splice sites
3' ss Seq
AGTTTAATGCTTCTTTTTAGATT
3' ss Score
7.7
5' ss Seq
GCGGTACCA
5' ss Score
3.49
Exon sequences
Seq C1 exon
GTGAGGTTTTAGGTCTGCTGGGTCCAAACGGAGCAGGGAAAAGCACAATCATGCACATGTTGTCTGGAGACACTGAAGCCACCGCTGGACAG
Seq A exon
ATTCTGATGGGAGATTACGGCACAGACTTTCAGCCTGCGGAAAACCCCTTGGAGCATGTCGGGTATTGTCCTCAAGTGAACCCTCTGTGGCCCAGAATCACTCTGCAGGAGCACCTGGAGATCTATTCTGCCATCAAGGGGTTACGTCAGCGTGATATCCCCAACATCATCAAGCG
Seq C2 exon
TGTTGTGAGTGCTCTTGAGCTTAAGGATCATCTTTACAAACAGTCAAAAAACTTGTCTGCAGGGCTAAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'38-40,'38-39,39-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.5=100)
A:
PF0000522=ABC_tran=FE(39.7=100)
C2:
PF0000522=ABC_tran=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTAGGTCTGCTGGGTCC
R:
TCCTCTTTAGCCCTGCAGACA
Band lengths:
162-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]