MmuEX6090924 @ mm9
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110138876-110140514:-
Coord C1 exon
chr11:110140423-110140514
Coord A exon
chr11:110139485-110139660
Coord C2 exon
chr11:110138876-110138951
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGTGGTTGCATTTCTGTAGATC
3' ss Score
7.32
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
GAGAGATCTTGGGACTGTTGGGTCCAAATGGAGCTGGCAAAAGCACAGTCATTAACACTCTGGTTGGGGACGTTGAGCCAACTTCAGGCAAG
Seq A exon
ATCTTTCTAGGAGATTATGGTTCACATTCAAGTGAAGATGACGAATCCATTAAGTGTATGGGGTACTGCCCCCAGACAAACCCACTGTGGCCAGATCTCACTCTACAGGAACATTTTGAGATTTACGGAGCTGTGAAAGGAATGAGTCCTGGTGACATGAAGGAAGTCATCAGTCG
Seq C2 exon
AATAACAAAAGCCCTTGATTTGAAAGAACATCTTCAGAAGACTGTAAAGAAGCTACCTGCAGGGATCAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'37-32,'37-31,38-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.5=100)
A:
PF0000522=ABC_tran=FE(39.7=100)
C2:
PF0000522=ABC_tran=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCTTGGGACTGTTGGGT
R:
TTCGCTTGATCCCTGCAGGTA
Band lengths:
165-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: