RnoEX0004895 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98581758-98583366:-
Coord C1 exon
chr10:98583275-98583366
Coord A exon
chr10:98582362-98582537
Coord C2 exon
chr10:98581758-98581833
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACATGGTTTGCATTTCGTAGATA
3' ss Score
6.09
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GAGAGATCTTGGGACTGTTGGGTCCAAATGGTGCTGGCAAAAGCACGATTATTAATATTCTTGTTGGGGATGTTGAACCAACTTCAGGCAAG
Seq A exon
ATATTTCTAGGAGATTATGGTTCACATTCAAATGAAGATGATGAATCCACCAAGTGTATGGGTTACTGCCCCCAGACAAACCCACTCTGGCCAGATATTACTCTGCAAGAACATTTTGAAATTTATGGAGCTGTGAAAGGGATGAGTTCAGGTGACATGAAGGAAGTAATCAGTCG
Seq C2 exon
AATAACAAAAGCCCTTGATTTGAAAGAACATCTTCAGAAAACTGTAAAGAAACTCCCTGCAGGGATCAAGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'38-44,'38-43,39-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.5=100)
A:
PF0000522=ABC_tran=FE(39.7=100)
C2:
PF0000522=ABC_tran=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCTTGGGACTGTTGGGT
R:
CTTTCGCTTGATCCCTGCAGG
Band lengths:
167-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]