DreEX0010604 @ danRer10
Exon Skipping
Gene
ENSDARG00000039456 | acbd6
Description
acyl-CoA binding domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2810]
Coordinates
chr8:14346641-14357254:+
Coord C1 exon
chr8:14346641-14346737
Coord A exon
chr8:14350700-14350782
Coord C2 exon
chr8:14357149-14357254
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTGATTTGTCTCTTTTTCAGTCT
3' ss Score
9.35
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTCGGCGTGGAAGCAGCTGGGGGACATGAGTACAGAACAGGCCATGCAGGAGTACGTGACCTGTGTACATGCCCTGGACCCAGAAGGCAGCCAGAAG
Seq A exon
TCTTCAGAGCGACGAGGAGGAGAAAAGCGAACTGGATTCGGTGGGCCAGCGGTTAGCTCTCTATACCAAGAGGAAAAGATAAG
Seq C2 exon
GGAAGAGGACAAAAACATTTTCGACTACTGTCGAGAGAACAACATCGAACACGTCAGCAAGGCCATCAGCTCCAAGACAGTGGACGTAAACACAAGAGACGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039456_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=0.464 C2=0.250
Domain overlap (PFAM):
C1:
PF0088714=ACBP=PD(35.3=90.9)
A:
NO
C2:
PF127962=Ank_2=PU(30.1=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGGGACATGAGTACAGA
R:
TACGTCCACTGTCTTGGAGCT
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]