GgaEX1005871 @ galGal3
Exon Skipping
Gene
ENSGALG00000003924 | ACBD6
Description
NA
Coordinates
chr8:6224130-6249683:+
Coord C1 exon
chr8:6224130-6224226
Coord A exon
chr8:6239782-6239864
Coord C2 exon
chr8:6249578-6249683
Length
83 bp
Sequences
Splice sites
3' ss Seq
AACCTTTCTTTTTCTTTCAGACA
3' ss Score
9.97
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GGAAGCTTGGAAAGCCCTGGGAGACACCAGTCCTCATCAAGCTATGCAGGAGTATGTTGCTACAGTGAAAAAACTGGACCCCAGCTGGAATCCCCAG
Seq A exon
ACAACAGAGAAGAGGGGGAAAGAAAGCAAAACTGCATTTGGAGGCCCGGTTGTCAGCTCGTTGTATCAAGAAGAAACAATCAG
Seq C2 exon
AGAAGAGGACAAGAACATTTTTGATTACTGCAGAGAAAACAACATTGACTACGTAACCAAAGCCATTCAATCGAAAAAAGTGGACGTGAATGTCGCAGATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003924-'2-10,'2-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.357 C2=0.000
Domain overlap (PFAM):
C1:
PF0088714=ACBP=PD(35.3=90.9)
A:
NO
C2:
PF127962=Ank_2=PU(30.1=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGACACCAGTCCTCATCA
R:
CATCTGCGACATTCACGTCCA
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]