HsaEX1002415 @ hg38
Exon Skipping
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180413366-180492365:-
Coord C1 exon
chr1:180492269-180492365
Coord A exon
chr1:180430180-180430262
Coord C2 exon
chr1:180413366-180413471
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCCTTCCCACAGATA
3' ss Score
14
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAAGCTTGGAAAGCACTTGGTGATTCAAGCCCCAGCCAAGCAATGCAGGAATATATCGCAGTAGTTAAAAAACTAGATCCAGGTTGGAATCCTCAG
Seq A exon
ATACCAGAGAAGAAAGGAAAAGAAGCAAATACAGGTTTTGGTGGGCCAGTTATTAGTTCTCTATATCATGAAGAAACCATCAG
Seq C2 exon
GGAAGAAGACAAAAATATATTTGATTACTGCAGGGAAAACAACATTGACCATATAACCAAAGCCATCAAATCGAAAAATGTGGATGTGAATGTGAAAGATGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124-'8-17,'8-14,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.337 C2=0.017
Domain overlap (PFAM):
C1:
PF0088714=ACBP=PD(35.3=90.9)
A:
NO
C2:
PF127962=Ank_2=PU(30.1=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACTTGGTGATTCAAGCCC
R:
TCCACATTTTTCGATTTGATGGCT
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains