MmuEX0003425 @ mm9
Exon Skipping
Gene
ENSMUSG00000033701 | Acbd6
Description
acyl-Coenzyme A binding domain containing 6 [Source:MGI Symbol;Acc:MGI:1919732]
Coordinates
chr1:157414715-157472088:+
Coord C1 exon
chr1:157414715-157414811
Coord A exon
chr1:157448584-157448666
Coord C2 exon
chr1:157471999-157472088
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCTTTTCTTCCACAGGTA
3' ss Score
13.41
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGAGGCATGGAAAGCCCTCGGTGACTCAAGCCCTAGCCAAGCAATGCAGGAATATATCGCGGCAGTTAAAAAACTAGATCCAGGATGGAATCCTCAG
Seq A exon
GTATCAGAGAAGAAGGGAAAAGAAGGCAGTAGTGGTTTCGGTGGTCCGGTTGTTAGTTCTCTATATCATGAAGAAACAATCAG
Seq C2 exon
GGCAGAGCTCTGCTCCACTGGGCATGTGACCGAGGACATAAGGAACTGGTGAAAGTCTTGCTACAGTATGAAGCTGGCATTAATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033701_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.321 C2=0.000
Domain overlap (PFAM):
C1:
PF0088714=ACBP=PD(35.3=90.9)
A:
NO
C2:
PF127962=Ank_2=FE(31.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCCTCGGTGACTCAAG
R:
TGCCAGCTTCATACTGTAGCA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: