DreEX0010940 @ danRer10
Exon Skipping
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20105637-20106850:-
Coord C1 exon
chr17:20106704-20106850
Coord A exon
chr17:20106484-20106504
Coord C2 exon
chr17:20105637-20105702
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCTTCACTTCTTCAGCGG
3' ss Score
7.89
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
CATGTTCGCGTTGGCTGGGAGCTCCTATTGACCACGATTGCTCGCACAATTAATGAAATCGAGACTCAAATTTTGACCCGTGATGCAAAAGGGATCAGCCAGGAGCAGATGCATGAGTTCCGGTCCTCTTTCAACCATTTTGATCGG
Seq A exon
CGGCTTCACAAGGCTAGACTG
Seq C2 exon
AAGAAGAACGGGGGCATGGATTCTGATGACTTTAGGGCCTGTCTGATCTCGATGGGTTATGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.014 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF088696=XisI=PD(31.8=42.9),PF134051=EF-hand_6=PU(33.3=20.4)
A:
NO
C2:
PF138331=EF-hand_8=PU(37.7=90.9)
Main Inclusion Isoform:
ENSDART00000138911fB968
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGTGATGCAAAAGGGATC
R:
GTCATCAGAATCCATGCCCCC
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]