DreEX0010941 @ danRer10
Exon Skipping
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20105637-20106850:-
Coord C1 exon
chr17:20106704-20106850
Coord A exon
chr17:20105935-20106012
Coord C2 exon
chr17:20105637-20105702
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTGGATACCTGCTCTCAGGAG
3' ss Score
4.63
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
CATGTTCGCGTTGGCTGGGAGCTCCTATTGACCACGATTGCTCGCACAATTAATGAAATCGAGACTCAAATTTTGACCCGTGATGCAAAAGGGATCAGCCAGGAGCAGATGCATGAGTTCCGGTCCTCTTTCAACCATTTTGATCGG
Seq A exon
GAGGACAGGGGTAAAGTCAGGCCTGATGAGTTTAAAGCATGTCTGATCAGTCTTGGGCATTTGGGAAATGACAAACAG
Seq C2 exon
AAGAAGAACGGGGGCATGGATTCTGATGACTTTAGGGCCTGTCTGATCTCGATGGGTTATGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.038 C2=0.045
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF088696=XisI=PD(31.8=42.9),PF134051=EF-hand_6=PU(33.3=20.4)
A:
PF134051=EF-hand_6=PD(60.0=69.2)
C2:
PF138331=EF-hand_8=PU(37.7=90.9)
Main Inclusion Isoform:
ENSDART00000138911fB969
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCTGGGAGCTCCTATTGA
R:
GTCATCAGAATCCATGCCCCC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]