DreEX0011034 @ danRer10
Exon Skipping
Gene
ENSDARG00000011188 | acvr2aa
Description
activin A receptor, type IIAa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
Coordinates
chr9:25597725-25614512:-
Coord C1 exon
chr9:25614304-25614512
Coord A exon
chr9:25608330-25608439
Coord C2 exon
chr9:25597725-25597879
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTCTCACAGCAC
3' ss Score
10.16
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCCATTCTCGGCCGCTCAGAAACACAAGAGTGCGTGTTCTACAACTACAACCCCAGCTTGGAGAACCGAGGAAACCGCAGCGGCATTGAGCCTTGCGTGGGAGACAAGGACAAGAGGCTTCATTGCTTCGCAACTTGGCGAAATGTGTCAGGAACGGTTGAAATAGTAAAGCAAGGCTGCTGGCTTGATGATGTCAACTGCTATGACAG
Seq A exon
CACTGAGTGTGTGGAGAAGAAGGAGGACCCAGATGTGTTCTTCTGCTGCTGTGAGGGCAATATGTGCAACGAGAAGTTCTTCTACAATCCCAACACGGCGCCAGTTCAGA
Seq C2 exon
CGACATCAAACCCCTTGACCCAGAAGCCGCCACTGTTCAGTACCCTTCTGTACTCCATCGTGCCCATCATGGGCATTGCAGCCATTGTCCTGCTCTCCTTCTGGATGTATCGGCATCACAAGTTGGCATACCCTCCTGTTCTGGTGCCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011188-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.087
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(66.3=85.9)
A:
PF0106418=Activin_recp=PD(32.6=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAGAACCGAGGAAACCG
R:
GAAGGAGAGCAGGACAATGGC
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]