DreEX0011035 @ danRer10
Exon Skipping
Gene
ENSDARG00000011188 | acvr2aa
Description
activin A receptor, type IIAa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
Coordinates
chr9:25582074-25608439:-
Coord C1 exon
chr9:25608330-25608439
Coord A exon
chr9:25597725-25597879
Coord C2 exon
chr9:25582074-25582217
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTTTCTCTCATCAGCGA
3' ss Score
7.53
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CACTGAGTGTGTGGAGAAGAAGGAGGACCCAGATGTGTTCTTCTGCTGCTGTGAGGGCAATATGTGCAACGAGAAGTTCTTCTACAATCCCAACACGGCGCCAGTTCAGA
Seq A exon
CGACATCAAACCCCTTGACCCAGAAGCCGCCACTGTTCAGTACCCTTCTGTACTCCATCGTGCCCATCATGGGCATTGCAGCCATTGTCCTGCTCTCCTTCTGGATGTATCGGCATCACAAGTTGGCATACCCTCCTGTTCTGGTGCCTACCCAG
Seq C2 exon
GACCCTGGACCAATGCCACCATCTCCCACCCTGGTCCAAAAGCCATTGCAATTGTTGGAAATCAAAGCTAGGGGGCGCTTTGGCTGTGTGTGGAAGGCTCAGCTGCTCAATGACTATGTGGCAGTGAAGATTTTCCCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011188-'6-9,'6-7,9-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.087 C2=0.078
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(32.6=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAAGAAGGAGGACCC
R:
AATGGGGAAAATCTTCACTGCCA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]