GgaEX1006209 @ galGal3
Exon Skipping
Gene
ENSGALG00000012444 | AVR2A_CHICK
Description
NA
Coordinates
chr7:36161712-36174310:+
Coord C1 exon
chr7:36161712-36161821
Coord A exon
chr7:36163131-36163285
Coord C2 exon
chr7:36174167-36174310
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTATTCCCTTCAGCAA
3' ss Score
9.28
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAATGATTGCATAGAGAAAAAAGACAGCCCTGAAGTGTTCTTCTGTTGTTGTGAAGGCAACATGTGTAATGAACGCTTCTTCTATTTTCCAGAAATGGAGGTCACACAGC
Seq A exon
CAACTTCCAATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTGTGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAA
Seq C2 exon
GATCCTGGACCACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTGTGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444-'4-6,'4-4,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.028
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAGCCCTGAAGTGTTCT
R:
CTGGATAGGGAATATTTTGACTGCA
Band lengths:
234-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]