DreEX6019738 @ danRer10
Exon Skipping
Gene
ENSDARG00000104700 | acvr2ab
Description
activin A receptor, type IIAb [Source:ZFIN;Acc:ZDB-GENE-120215-23]
Coordinates
chr6:870649-878226:+
Coord C1 exon
chr6:870649-870752
Coord A exon
chr6:872512-872666
Coord C2 exon
chr6:878083-878226
Length
155 bp
Sequences
Splice sites
3' ss Seq
TAATCTGTGTTTGTGTGCAGCCA
3' ss Score
7.62
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CAGTGAGTGTGTGGAGCGCAAAGAGAATATTGATGTCTTCTTCTGCTGCTGCGAGGGAAACTTGTGCAACCAGAAGTTTCACTACAATCCAGAGACGGTTGAGC
Seq A exon
CCACGTTGAACCCCGTCCCCCCGAAGCCGGACTTGTTTCCCACGCTGCTCTACTCTCTGCTGCCCATCATGGCGGTCGCCGTAATTCTCTTCATCTCCTTCTGGATGTACCGTCACCTGAAGTTGACGTACCCGCCGCTGCTCGTGCCGTCACAG
Seq C2 exon
GATCCAGGTCTGACTCCTCCGTCTCCTCTGCTGGGTCAGAAGCCTCTGCAGCTGCTGGAGCTGAAGGCCAGAGGACGCTTCGGCTGCGTGTGGAAAGCTCAGCTGCTCAGTGAAGCCGTGGCGGTCAAGATCTTCCCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104700-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=85.7)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTGTGGAGCGCAAAG
R:
GACAGGGAAGATCTTGACCGC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]