RnoEX0006474 @ rn6
Exon Skipping
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33006347-33021596:+
Coord C1 exon
chr3:33006347-33006456
Coord A exon
chr3:33006643-33006797
Coord C2 exon
chr3:33021453-33021596
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCCCTCTTTCACAGCCA
3' ss Score
10.16
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GACTGATTGTATAGAAAAAAAAGACAGCCCTGAAGTGTACTTTTGTTGCTGTGAGGGCAATATGTGTAATGAAAAGTTCTCTTATTTTCCGGAGATGGAAGTCACACAGC
Seq A exon
CCACATCAAATCCTGTTACCCCGAAACCACCCTACTACAACATCCTGCTGTATTCCTTGGTACCACTTATGTTAATTGCGGGGATTGTCATTTGTGCGTTTTGGGTGTACAGACATCACAAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAG
Seq C2 exon
GACCCTGGACCACCTCCACCTTCCCCATTACTAGGGTTGAAGCCATTGCAGCTATTGGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAGTTGCTCAATGAGTATGTGGCTGTCAAAATATTTCCGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334-'3-10,'3-6,4-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.058 C2=0.010
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAGCCCTGAAGTGTACT
R:
CTGTATCGGAAATATTTTGACAGCCA
Band lengths:
234-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]