Special

DmeEX6020528 @ dm6

Exon Skipping

Gene
Description
The gene punt is referred to in FlyBase by the symbol Dmelput (CG7904, FBgn0003169). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:14619030..14625703. Its molecular function is described by 8 unique terms, many of which group under: phosphotransferase activity, alcohol group as acceptor; catalytic activity, acting on a protein; kinase activity; catalytic activity; protein kinase activity. It is involved in the biological process described with 22 unique terms, many of which group under: embryonic development via the syncytial blastoderm; maintenance of cell number; digestive tract development; regulation of synapse structure or activity; multicellular organismal reproductive process. 44 alleles are reported. The phenotypes of these alleles manifest in: secretory vesicle; developing embryonic structure; endomembrane system; morphogenetic furrow; embryonic head. The phenotypic classes of alleles include: increased mortality during development; phenotype; cell number defective; size defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis.
Coordinates
chr3R:14621274-14623419:-
Coord C1 exon
chr3R:14623243-14623419
Coord A exon
chr3R:14622158-14622303
Coord C2 exon
chr3R:14621274-14622089
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTGTATCGTTGCAGTGC
3' ss Score
8.23
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GCATCCTGCGCATCAAGATGAAGGGCTGCTTCACGGACATGCACGAATGCAATCAGACGGAGTGCGTGACCAGTGCAGAGCCACGGCAGGGAAACATTCACTTCTGCTGCTGCAAGGGATCGCGGTGCAATTCCAACCAGAAATATATTAAAAGCACCACGGAGGCAACCACACAAG
Seq A exon
TGCCCAAGGAGAAGACGCAGGACGGCAGCAATTTGATATACATCTACATTGGCACCTCCGTTTTCAGCGTGCTCATGGTCATTGTTGGCATGGGCCTTCTTCTCTACCGACGCCGCAAGCAGGCGCACTTTAACGAGATACCCACG
Seq C2 exon
CACGAGGCTGAGATAACAAACTCATCGCCATTGCTCAGCAACCGTCCCATTCAGCTGCTGGAACAGAAGGCCAGTGGTAGATTCGGTGATGTGTGGCAAGCCAAGCTCAACAATCAGGATGTGGCCGTCAAGATCTTTCGCATGCAGGAAAAAGAATCGTGGACCACGGAGCACGATATCTACAAGCTGCCGCGCATGCGCCATCCGAACATCCTCGAATTCCTGGGCGTTGAGAAGCACATGGACAAGCCGGAATATTGGCTGATATCCACCTACCAGCATAACGGATCACTATGCGACTACCTCAAATCGCACACGATCTCATGGCCAGAGTTGTGCCGCATCGCTGAGTCCATGGCCAATGGACTGGCACATCTGCACGAGGAGATCCCGGCATCAAAGACCGATGGGCTAAAACCATCGATAGCTCACCGAGACTTCAAGTCTAAGAACGTACTGCTTAAGAGCGATCTGACGGCCTGTATAGCTGACTTTGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0003169-'9-4,'9-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.117 A=0.122 C2=0.011
Domain overlap (PFAM):

C1:
PF0106418=Activin_recp=PD(52.6=83.3)
A:
NO
C2:
PF0006920=Pkinase=PU(88.9=93.8)


Main Inclusion Isoform:
FBpp0303260


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0082436, FBpp0306147


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAGATGAAGGGCTGCT
R:
TACCACTGGCCTTCTGTTCCA
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)