DreEX0000150 @ danRer10
Exon Skipping
Gene
ENSDARG00000103108 | ACVR2B (2 of 2)
Description
activin A receptor, type IIB [Source:HGNC Symbol;Acc:HGNC:174]
Coordinates
chr2:52243593-52249827:+
Coord C1 exon
chr2:52243593-52243702
Coord A exon
chr2:52245048-52245199
Coord C2 exon
chr2:52249684-52249827
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCGTGTGTGTTTTCTTGCAGTGA
3' ss Score
9.54
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
ACAGGAGTGTGTGGCCACAGAGGAGAGTCCGCAGGTGTTCTTCTGCTGCTGTGAAGGGAACTATTGCAACGAGAAGTTCACACACCTGCCGGAAGCCATCGCCCCTGCAG
Seq A exon
TGAAGATCCAGCCTCCACAGCCGGGTCCGTCTCTTTTTGGCATCCTGGTTTATTCTCTTCTTCCTCTGGCCATTCTCTCTTTGGCCCTGGTGCTCGCTTGCTGGACGTACCACCAGCGAAAACCACCATACAGACACGTCGACATCGGACAG
Seq C2 exon
GATGCTGGTCTTCCTCCACCGTCTCCTCTGGTTGGACTGAAGCCTCTGCAGCTGCTGGAACTGAAAGCTCGTGGTCGCTTTGGCTGTGTGTGGAAGGCCCAACTACTGAGCGAATATGTGGCTGTCAAAATATTCCCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103108_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGCCACAGAGGAGAG
R:
TGGGGAATATTTTGACAGCCACA
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]