MmuEX6069759 @ mm10
Exon Skipping
Gene
ENSMUSG00000061393 | Acvr2b
Description
activin receptor IIB [Source:MGI Symbol;Acc:MGI:87912]
Coordinates
chr9:119427967-119428568:+
Coord C1 exon
chr9:119427967-119428076
Coord A exon
chr9:119428201-119428352
Coord C2 exon
chr9:119428425-119428568
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGGCTCCATGTGTCCCCCAGTCA
3' ss Score
5.35
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCAGGAGTGTGTGGCCACCGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGCGAAGGCAACTTCTGCAACGAGCGCTTCACCCACTTGCCGGAGCCTGGGGGCCCAGAAG
Seq A exon
TCACGTACGAGCCACCCCCGACAGCCCCCACCCTGCTCACGGTGCTGGCCTACTCGCTGCTGCCCATTGGAGGCCTCTCTCTCATCGTCCTGCTGGCCTTCTGGATGTATCGTCATCGGAAGCCTCCCTACGGCCATGTGGACATCCATGAG
Seq C2 exon
GACCCGGGGCCTCCGCCCCCATCCCCTCTGGTGGGCCTGAAGCCACTACAGCTGCTGGAGATCAAGGCTCGGGGCCGCTTTGGCTGCGTTTGGAAAGCTCAGCTCATGAACGACTTTGTGGCTGTGAAGATCTTCCCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061393-'8-6,'8-3,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.156 C2=0.086
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGTGTGTGGCCAC
R:
GGGAAGATCTTCACAGCCACA
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types