RnoEX0006478 @ rn6
Exon Skipping
Gene
ENSRNOG00000014477 | Acvr2b
Description
activin A receptor type 2B [Source:RGD Symbol;Acc:2028]
Coordinates
chr8:128113303-128113902:+
Coord C1 exon
chr8:128113303-128113412
Coord A exon
chr8:128113559-128113686
Coord C2 exon
chr8:128113759-128113902
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTACGAGCCACCCCCGACAGCCC
3' ss Score
1.11
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCAGGAGTGTGTGGCCACTGAGGAGAACCCCCAGGTGTATTTCTGCTGCTGTGAAGGCAATTTCTGCAACGAGCGCTTCACCCATTTGCCGGAGCCTGGGGGCCCAGAAG
Seq A exon
CCCCCACCCTGCTCACGGTGCTGGCCTATTCGCTGCTGCCCATTGGAGGCCTCTCTCTCATCGTCCTGCTGGCCTTCTGGATGTACCGACATCGAAAGCCTCCCTACGGCCACGTGGACATCCATGAG
Seq C2 exon
GACCCTGGGCCTCCTCCCCCATCGCCTCTGGTGGGCCTGAAGCCGCTACAGTTGCTGGAGATCAAGGCTCGAGGTCGCTTTGGCTGCGTCTGGAAGGCTCAGCTCATGAACGACTTTGTGGCTGTGAAGATCTTCCCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014477-'5-4,'5-3,6-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.196 C2=0.104
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGCCACTGAGGAGAA
R:
TGGGAAGATCTTCACAGCCAC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]