GgaEX6018334 @ galGal3
Exon Skipping
Gene
ENSGALG00000006158 | ACVR2B
Description
NA
Coordinates
chr2:5673087-5676651:-
Coord C1 exon
chr2:5676542-5676651
Coord A exon
chr2:5675084-5675235
Coord C2 exon
chr2:5673087-5673230
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTTCTTTCCTTACAGTCA
3' ss Score
11.33
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAGGAGTGCGTAGCCACAGAAGAAAACCCTCAAGTGTTTTTCTGCTGCTGCGAGGGCAACTACTGCAATGAGAAATTCACCCACTTGCCTGAAGTAACTGGCCCAGAAG
Seq A exon
TCATATATGAGCCGCCACCACCAACACCCTCCCTGCTTAACATCCTGGTGTACTCTCTGCTGCCCATCGCTGTCCTGTCAGTGGCCATCCTCTTGGCCTTCTGGATGTATCGGCACCGCAAGCCTCCCTACGGGCACGTTGACATCAATGAG
Seq C2 exon
GACCCCGGCCCACCACCTCCTTCTCCCCTGGTTGGCCTAAAACCTCTACAGCTCCTGGAGATCAAAGCCAGGGGACGCTTTGGCTGCGTGTGGAAGGCTCAGCTGATGAATGACTACGTAGCAGTGAAAATCTTCCCAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006158-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.137 C2=0.101
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGCCACAGAAGAAAACCCT
R:
TGAATTGGGAAGATTTTCACTGCT
Band lengths:
244-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]