BtaEX6093412 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018105 | ACVR2B
Description
Bos taurus activin A receptor, type IIB (ACVR2B), mRNA. [Source:RefSeq mRNA;Acc:NM_174495]
Coordinates
chr22:11887947-11888584:+
Coord C1 exon
chr22:11887947-11888056
Coord A exon
chr22:11888211-11888362
Coord C2 exon
chr22:11888441-11888584
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGGCTCCGTGTGTCCCCTAGTCA
3' ss Score
6.79
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCAGGAGTGCGTGGCCACCGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGCGAAGGCAACTTCTGCAACGAGCGCTTCACCCACCTGCCCGAGGCGGGCGGCCCAGAAG
Seq A exon
TCACGTACGAGCCACCCCCGACAGCCCCCACCCTGCTCACTGTGCTGGCCTACTCGCTGCTGCCCGTCGGGGGCCTCTCCCTCATCGCCCTGCTGGCCTTCTGGATGTACCGACATCGCAAGCCCCCCTACGGCCACGTGGACATCCACGAG
Seq C2 exon
GACCCTGGACCTCCACCCCCGTCCCCTCTGGTGGGCCTGAAGCCTCTGCAACTGCTGGAGATCAAGGCTCGGGGGCGCTTTGGTTGTGTCTGGAAGGCGCAGCTCATGAACGACTTCGTGGCTGTCAAGATCTTCCCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018105-'6-4,'6-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.196 C2=0.125
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCACCGAGGAGAACC
R:
GGAGTGGGAAGATCTTGACAGC
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]