DreEX0014771 @ danRer10
Exon Skipping
Gene
ENSDARG00000035719 | arl5c
Description
ADP-ribosylation factor-like 5C [Source:ZFIN;Acc:ZDB-GENE-040426-1866]
Coordinates
chr3:15984576-15988953:-
Coord C1 exon
chr3:15988870-15988953
Coord A exon
chr3:15987242-15987393
Coord C2 exon
chr3:15984576-15985166
Length
152 bp
Sequences
Splice sites
3' ss Seq
AATCTCATCTCTCCACTCAGGAT
3' ss Score
8
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATTATCATCCTGGTGGTTGACAGCACTGATCGAGAACGCCTGACTGTAACTAAAGAGGAGCTTCATCGCATGCTGGCACACGAG
Seq A exon
GATCTCCAGAATGCATCAGTGCTGGTTTTGGCAAATAAACAGGACATGGAGGACAGTATGACTGCAGCAGAAATCTCTCAGAGTCTAACCCTCAGTTCACTCACCGCTCGATCCTGGCATGTGCAGGCCTGCTGCGCGCTCACCGGGGAAGG
Seq C2 exon
TTTACCAGCCAGTCTAGACTGGATGCGCTCCCGTGTCGTGGCGAATTAGTCCATCAGCAGCGCTTTCTTCAACCTCTGGAGCTGTTAAACGAGAGATCAGGCCTGATTTGACTTTTATTAATCTGTCTCTCAGTGAAATGGAGTAATCTGAAGGAACAAACAAACTCTGGAGACCTGAATGGACTCTCTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAATGTGTATGTGTGTATACACGTTTGTGTTCGTACAATATGTGACTCCGTTCTAGAGGTCCACATGTTTACATTATACTGACGCCTGAAATGATCGTGTGAAATGATCATGATGTGTTGGTGCCACTGTATTGGCTGTGCTGACGACCAGGAGCCATTGTCTGCCGAGAGGCTTTGTGATGAGCCCACTAAGCTATTGAACAAACATTACTTGAAGTATTTAAAGTGAACTGATGATTTGTGTGTTGCGCATGCTGTATGGAGCCTAGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035719-'5-8,'5-5,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(18.0=100),PF0002516=Arf=FE(15.6=100)
A:
PF128032=G-7-MTase=PD(26.0=76.5),PF0002516=Arf=FE(28.9=100)
C2:
PF0002516=Arf=PD(6.9=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAGCTTCATCGCATGC
R:
ACACACACACACACACACACA
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]