GgaEX1009084 @ galGal4
Exon Skipping
Gene
ENSGALG00000012509 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr7:34807788-34813869:-
Coord C1 exon
chr7:34813786-34813869
Coord A exon
chr7:34810280-34810431
Coord C2 exon
chr7:34807788-34809768
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTTTCCCCCAAGGAC
3' ss Score
10.4
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAGAGAATTTCGGTGACTAAAGAAGAACTGTATAAGATGTTAGCACATGAG
Seq A exon
GACTTGAAGAAAGCAGGTTTGCTGATCTTTGCTAACAAGCAAGATGTTAAAGAGTGTATGACGGTGGCTGAAATCTCTCAGTTTCTGAAGCTGACTTCAATTAAGGATCACCAGTGGCACATTCAGGCGTGCTGTGCTCTAACCGGAGAGGG
Seq C2 exon
ACTCTGCCAAGGACTCGAATGGATGATGTCAAGGCTAAAGATCAGATGATTTTTAATGACCCCTTTGCACAGACATTGCTTTAAAAAAAAAAAGCTGTACCCGTGGTTACCCTCACAGTGGCAGAATTGCTGGGTTAGGTGTATTTATAATGAACTGATTTCAACTTTATTTTCTACGTAGATACACACACATACACACGTATATAAATTCAGACCCTCAGCAAAAAGAAAGATGCAGTTGATGGCTCAATTTGTTTTCCTGGTTGTTTTCCTCTGGAGATGCGTGTGAAAGCAGTGATCAGCCTTCCTTCCAAGATACAGCCACTGAGAACAGTCTGATGCTGAGTGTGGTGAAGATGAAGCAAGAGAAAGAAGTTATGCTTTGGGGTTTCATTATTACATTGTAGTCCTCTCTAGTCAAAGATGTGGCTTCGTTAATTTCAGTAAATTAGCAAACAAATCAATGGCATAGATATCAACTTTCCAGTATTTTTAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509-'10-15,'10-14,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.9=100)
A:
PF0002516=Arf=FE(29.4=100)
C2:
PF0002516=Arf=PD(7.1=70.6)
Main Skipping Isoform:
ENSGALT00000020434fB5133
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGAGAATTTCGGTGACT
R:
CGTGTGTATGTGTGTGTATCTACGT
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]