RnoEX0011629 @ rn6
Exon Skipping
Gene
ENSRNOG00000006839 | Arl5a
Description
ADP-ribosylation factor like GTPase 5A [Source:RGD Symbol;Acc:621327]
Coordinates
chr3:37924793-37936954:-
Coord C1 exon
chr3:37936871-37936954
Coord A exon
chr3:37929437-37929588
Coord C2 exon
chr3:37924793-37926975
Length
152 bp
Sequences
Splice sites
3' ss Seq
AGTTTGATTTGCTTTTACAGGAC
3' ss Score
9.25
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTTGTAATAGTTGTGGTGGACAGCACAGACAGAGAAAGAATTTCTGTAACTAGAGAAGAGCTCTACAAAATGCTAGCCCACGAG
Seq A exon
GACCTAAGGAAAGCTGGGTTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACAGTAGCAGAAATCTCCCAGTTTTTGAAGCTCACTTCTATAAAAGACCACCAATGGCATATCCAAGCATGCTGTGCTCTCACTGGCGAGGG
Seq C2 exon
GTTATGCCAAGGACTTGAATGGATGATGTCACGGCTGAAGATCAGATGATCTCTTCTGACCCCTTCTCATGGACTCTGTATAAACAAAGTGCTGGACTTTATCTGAAAGCTGCAAAAAATGGTTTAGATATATTTATAATAAACTGACTTAAGAGTTTTCTACAAGAAGAAAATTAAGACCATTTATTTGAAAACAGATGAAATGTCACCACCTCGTTTGCTCTCTCATTCCTTCCAAACCTGTGACTGGTATTTTCTCATGATGAATCCTCTCCGGACATGGGAGAGTTCTAATGAATACAAGGGAGAGGAAGACATTTGAACTTGGAGCTTTATTTCCTCGACGAGCCCACCCTGCCCCAAGTGAATGTTCCCTTTTCATTACATTGAATCAAATACGGATCAGCACGGATACTGTTTCCAGTTTTTAAAAATGTAATAATATTATGGAAAGTATTTTACTTAAAGTTGAATATGTATTGTGTATATACCTCAAGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006839_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.7=100)
A:
PF0002516=Arf=FE(29.1=100)
C2:
PF0002516=Arf=PD(7.0=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTACAAAATGCTAGCCCAC
R:
GAGAGAGCAAACGAGGTGGTG
Band lengths:
253-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]