GgaEX1009084 @ galGal3
Exon Skipping
Gene
ENSGALG00000012509 | F1NCH5_CHICK
Description
NA
Coordinates
chr7:36935253-36940062:-
Coord C1 exon
chr7:36939979-36940062
Coord A exon
chr7:36936473-36936624
Coord C2 exon
chr7:36935253-36935961
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTCTTTCCCCCAAGGAC
3' ss Score
10.4
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAGAGAATTTCGGTGACTAAAGAAGAACTGTATAAGATGTTAGCACATGAG
Seq A exon
GACTTGAAGAAAGCAGGTTTGCTGATCTTTGCTAACAAGCAAGATGTTAAAGAGTGTATGACGGTGGCTGAAATCTCTCAGTTTCTGAAGCTGACTTCAATTAAGGATCACCAGTGGCACATTCAGGCGTGCTGTGCTCTAACCGGAGAGGG
Seq C2 exon
ACTCTGCCAAGGACTCGAATGGATGATGTCAAGGCTAAAGATCAGATGATTTTTAATGACCCCTTTGCACAGACATTGCTTTAAAAAAAAAAAGCTGTACCCGTGGTTACCCTCACAGTGGCAGAATTGCTGGGTTAGGTGTATTTATAATGAACTGATTTCAACTTTATTTTCTACGTAGATACACACACATACACACGTATATAAATTCAGACCCTCAGCAAAAAGAAAGATGCAGTTGATGGCTCAATTTGTTTTCCTGGTTGTTTTCCTCTGGAGATGCGTGTGAAAGCAGTGATCAGCCTTCCTTCCAAGATACAGCCACTGAGAACAGTCTGATGCTGAGTGTGGTGAAGATGAAGCAAGAGAAAGAAGTTATGCTTTGGGGTTTCATTATTACATTGTAGTCCTCTCTAGTCAAAGATGTGGCTTCGTTAATTTCAGTAAATTAGCAAACAAATCAATGGCATAGATATCAACTTTCCAGTATTTTTAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509-'3-11,'3-10,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(16.0=100)
A:
PF0002516=Arf=FE(29.6=100)
C2:
PF0002516=Arf=PD(7.1=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGAGAATTTCGGTGACT
R:
CGTGTGTATGTGTGTGTATCTACGT
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]