MmuEX0006141 @ mm10
Exon Skipping
Gene
ENSMUSG00000036093 | Arl5a
Description
ADP-ribosylation factor-like 5A [Source:MGI Symbol;Acc:MGI:1922673]
Coordinates
chr2:52397951-52412145:-
Coord C1 exon
chr2:52412062-52412145
Coord A exon
chr2:52404906-52405057
Coord C2 exon
chr2:52397951-52402432
Length
152 bp
Sequences
Splice sites
3' ss Seq
AGTTTTATTTGTTTTTACAGGAC
3' ss Score
9.54
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
TTTGTAATAGTTGTTGTGGACAGCACAGACAGAGAAAGAATTTCGGTAACTAGAGAAGAGCTCTACAAGATGCTAGCCCACGAG
Seq A exon
GACCTAAGAAAAGCTGGGTTGCTGATTTTTGCTAATAAACAAGATGTTAAAGAATGCATGACAGTAGCAGAAATCTCCCAGTTTTTGAAGCTTACTTCTATAAAAGACCACCAGTGGCATATTCAAGCATGTTGCGCTCTTACTGGCGAGGG
Seq C2 exon
GTTATGCCAAGGACTTGAATGGATGATGTCACGGCTGAAGATCAGATGATCTCTTCTGACCCCTCCTCACAGACTCTGTATAAAGAAAGTGCTGGACTTTTCCTGAAAGCTGCAAAAAAATGGTTTAGATATATTTATAATAAACTGACTTAAGAGTTTTCTATAAGAAGAAAATTAAGACCACTTATTTGAAAACAAAGATGAAATGTCACCACCCGTTTGCGCTCTCATTCCTTCCAAGCCTGTGACTGGTATTTTCTCATGATGAATCCTCTCAGGACATGGCAGAGCTTGGCGAGTACAAAGGGAGAGGAAGACATTTGAACTTTAGAACTTTGTTTCAGCGTGACTCTCCCACCCTGCCCCAAGTTGAATGTTCCCTTCACATTGAATCAAATACAAATCAGCACAGATACTGTTTCCAGTTTTTAAAAATGTAATATTATGGAAAGTATTTTGCTTCAAGTTGAATATGTATTGTGTATATACCTCAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036093_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.7=100)
A:
PF0002516=Arf=FE(29.1=100)
C2:
PF0002516=Arf=PD(7.0=70.6)
Main Skipping Isoform:
ENSMUST00000036541fB6170
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTACAAGATGCTAGCCCA
R:
GCAAACGGGTGGTGACATTTC
Band lengths:
249-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types