HsaEX6022324 @ hg19
Exon Skipping
Gene
ENSG00000141748 | ARL5C
Description
ADP-ribosylation factor-like 5C [Source:HGNC Symbol;Acc:31111]
Coordinates
chr17:37313147-37317604:-
Coord C1 exon
chr17:37317521-37317604
Coord A exon
chr17:37316844-37316995
Coord C2 exon
chr17:37313147-37313195
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTCCTCTGTCCACAGGCT
3' ss Score
10.42
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
TTTATCATCCTTGTGATTGACAGCACGGACCGGGATCGGCTGCTGACCACTCGGGAGGAGCTATATAAAATGCTGGCCCATGAG
Seq A exon
GCTCTACAGGATGCTTCAGTCCTGATATTTGCCAATAAGCAGGACGTGAAGGACTCCATGAGGATGGTGGAGATCTCCCATTTCCTTACTCTCAGCACCATCAAAGACCACTCGTGGCATATACAAGGCTGCTGTGCCCTCACCAGGGAAGG
Seq C2 exon
GCTGCCTGCCAGACTTCAGTGGATGGAATCTCAGGCCGCTGCTAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141748-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=FE(16.1=100),PF0002516=Arf=FE(15.3=100)
A:
PF128032=G-7-MTase=FE(29.8=100),PF0002516=Arf=FE(28.4=100)
C2:
PF128032=G-7-MTase=PD(2.4=23.5),PF0002516=Arf=PD(6.8=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCCTTGTGATTGACAGCACG
R:
TCAGTTAGCAGCGGCCTGAG
Band lengths:
130-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)