DreEX6006870 @ danRer10
Exon Skipping
Gene
ENSDARG00000094709 | arl8
Description
ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
Coordinates
chr7:41435821-41438517:-
Coord C1 exon
chr7:41438434-41438517
Coord A exon
chr7:41438153-41438304
Coord C2 exon
chr7:41435821-41436071
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCCTCATTCATTCAGGAT
3' ss Score
9.34
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TTCATCATACTGGTAGTGGACAGTACGGACAGAGAGAGACTAGCCATTTCAAAAGAAGAGCTTTACAGAATGCTTGCGCACGAG
Seq A exon
GATTTGCGCAAAGCTGCAGTGTTGATCTTTGCTAATAAGCAGGACATGAAAGGATGTATGTCAGCAGCAGAGATTTCCAAATACCTGACACTCAGCTCCATCAAGGATCATCCATGGCACATCCAGTCCTGCTGTGCGCTCACTGGAGAAGG
Seq C2 exon
GCTGTGTCAAGGTTTAGAATGGATGACCTCGAGGGCTGGACTCAGATAGCCTCTGCTTTTCTGGCTAGACTGATTGACAGTGATTTCCACCTCCTCAGGTGGCATCGCAGACTCATCTCATCGGCTGCTTACCTTTTATTTTTAATCTGTCGGTCAGAATTGACACTATGCAGCTGAACTGTCTGGACACCTACCTCAGCTGGGATTTAACGGTAACGTGAATCTGGTTTGATGGATTTGTCGATCAGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094709-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(28.4=100)
C2:
PF0002516=Arf=PD(6.8=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGACAGAGAGAGACTAGCC
R:
AGGTGTCCAGACAGTTCAGCT
Band lengths:
252-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]