HsaEX6087754 @ hg38
Exon Skipping
Gene
ENSG00000165997 | ARL5B
Description
ADP ribosylation factor like GTPase 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr10:18672622-18681639:+
Coord C1 exon
chr10:18672622-18672705
Coord A exon
chr10:18673984-18674135
Coord C2 exon
chr10:18675168-18681639
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGTCTTGATTGCAGGAT
3' ss Score
8.15
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTCATCATTCTTGTTGTTGATAGCATTGACAGGGAACGACTAGCTATTACAAAAGAAGAATTATACAGAATGTTGGCTCATGAG
Seq A exon
GATTTACGGAAGGCTGCAGTCCTTATCTTTGCAAATAAACAGGATATGAAAGGGTGTATGACAGCAGCTGAAATCTCGAAATACCTCACCCTTAGTTCAATTAAGGATCATCCATGGCACATTCAATCCTGCTGTGCTCTCACAGGAGAAGG
Seq C2 exon
GTTATGCCAAGGTCTAGAGTGGATGACCTCCCGGATTGGTGTGAGATAACTTTTTTGCTTGAAAGAGACTGCTCTATTTATTCTGTGACATGAACATTTTTTCCTAGTACCTTTGGCTGCTAAGGCAGCAGCATGTTTAATTTATAACAACACAAACCTCTGAGAGCAACACTTGAATCAAGTGCAGCTGAACTGGAACATAAAAGATTTTTTCTTAACTTTTTTTTTTTAACACACTAATCTTCAGTTGGATGAATGTAATGTATAACTATGTTTTCAGCAACAATTCTTCTGTTTATTCTAATTAATCAGTGACTGCCTTGTAAGAAATGTTTGTCATATGCGTGATGTCTTCTGAAATATTCTTATAACCTTAATGACCAATTGCTTTCAATTCTTGACCAGCACTCCCTCCCAACCAGAGAATTACTGGTTTGATAGAGTAGTCTTGGAAACCATCAGGTACTGCCTGCAGACTTCTCCAGCACTAAATATATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165997-'15-10,'15-9,17-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(28.4=100)
C2:
PF0002516=Arf=PD(6.8=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACAGGGAACGACTAGCT
R:
TCCAGTTCAGCTGCACTTGAT
Band lengths:
258-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains