GgaEX6018721 @ galGal4
Exon Skipping
Gene
ENSGALG00000008557 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:RefSeq peptide;Acc:NP_001137441]
Coordinates
chr2:18960948-18965794:-
Coord C1 exon
chr2:18965711-18965794
Coord A exon
chr2:18963922-18964073
Coord C2 exon
chr2:18960948-18962837
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATATTCTAAATTTCTTCTAGGAT
3' ss Score
9.54
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
TTCATCATTCTTGTGGTTGACAGCATTGACAGAGAGCGACTTTCTATTACAAAAGAAGAGCTTTATAGAATGCTGGCTCATGAG
Seq A exon
GATTTACGGAAGGCTGCAGTTCTCATTTTTGCAAACAAGCAGGACATGAAGGGTTGCATGACAGCTGCTGAGATATCTGCATACCTCACCCTTAGCTCCATAAAGGATCATCCATGGCACATTCAGTCTTGTTGCGCTTTGACAGGAGAAGG
Seq C2 exon
GTTATGCCAAGGCTTGGAGTGGATGACCTCCCGCATTGGAGTGAGATAGCTGTTTGTTTTTTTTCAAAGGAAGAGACTTCTATTTATCCTGTGAACATGTACATTTTTCTGTACTTCTGGCTGCTGAGCCAGTGACCATGTTTAATTTATATCAGCCAATCTCTAAGCTGTACTTGAATCAAGTGCAGTTGAACTGAAACACAAAGTATTTTCTTAACATTTTTTAATACACTAATCTTCAACTGGATGGACATATGTGAATCTGTTTTTAAACATTTAAATTCCTCTGGCTATGTATTCTAACTTTTTCAATGATAACTTTTTAAAATCTCTTTTGTCATTGCCAGTATTTCATACTTCTTCTTTCTAAAAAGTTTCTATAACTTACTAACATAAATCTAGATATTTTGTTTGATAATGGCAAAAGTAGCTAGTAGGTTGACTTTATTCTGGCACAGTTTTTAGTCTCCAAAGTTGGGCTTCTTGGAACATCAGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(28.4=100)
C2:
PF0002516=Arf=PD(6.8=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATTGACAGAGAGCGAC
R:
TCAAGTACAGCTTAGAGATTGGCTG
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]