MmuEX6099092 @ mm10
Exon Skipping
Gene
ENSMUSG00000017418 | Arl5b
Description
ADP-ribosylation factor-like 5B [Source:MGI Symbol;Acc:MGI:1923119]
Coordinates
chr2:15073124-15082452:+
Coord C1 exon
chr2:15073124-15073207
Coord A exon
chr2:15074962-15075113
Coord C2 exon
chr2:15076256-15082452
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGTGTCAATTACAGGAT
3' ss Score
9.63
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TTCATCATTCTTGTTGTGGATAGCATTGACAGGGAACGCCTGGCTATTACGAAAGAAGAATTATACAGAATGTTGGCCCATGAG
Seq A exon
GATTTAAGGAAAGCTGCAGTCCTTATCTTTGCAAATAAACAGGATATGAAAGGGTGCATGACAGCAGCTGAAATCTCCAAATACCTCACCCTAAGTTCAATCAAGGACCACCCGTGGCACATCCAGTCGTGCTGTGCGCTCACAGGAGAAGG
Seq C2 exon
GTTGTGCCAAGGTCTAGAGTGGATGACCTCCAGGATTGGTGTGAGATAATTTTTTTGCTTGAAAAAGACTTCTCTATTTATTCGGTGATATGAACATTTTTCCTAATACCTTTGGCTGCTGAGGCAGCAGCATGTTTAATTTATGACAACACAAACCTCCAAGTGACGCTTGAATCAAGTGCCACTGTACTGGAACATAAAGATGTTTTCTTACCTTCGTTTCCCATGTACTAATCTCGGTCGGACGAGCATAACGTGTCACTATGTTGTAGAAGCCGGACTCTTCTGACTGTATTCTAACTCTTCAGTGACTGCCTTGTTAAAAACCATTTGTCATATATTTCCTGACATCTGAAGTTTCGTTATGTCCTTTATAACCAGTTTCTTTCACCTCTTGGCCACCATGCTCTTTCCGAGATACTGGTTTGACAGAATAGTAGTGGGAACCGGCATGTATTATTTATTTATCCAGCACTAAGCATTCTTTGCTCTACAAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017418-'5-14,'5-12,6-14
Average complexity
S
Mappability confidence:
86%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(16.3=100)
A:
PF0002516=Arf=FE(30.1=100)
C2:
PF0002516=Arf=PD(23.5=85.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGGAACGCCTGGCTATTA
R:
AGTGGCACTTGATTCAAGCGT
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types