RnoEX6054270 @ rn6
Exon Skipping
Gene
ENSRNOG00000018714 | Arl5b
Description
ADP-ribosylation factor like GTPase 5B [Source:RGD Symbol;Acc:1305569]
Coordinates
chr17:82083887-82091362:+
Coord C1 exon
chr17:82083887-82083970
Coord A exon
chr17:82085551-82085702
Coord C2 exon
chr17:82086792-82091362
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTGTGTCCATCCCAGGAT
3' ss Score
8.98
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TTCATCATTCTTGTTGTCGATAGCATTGACAGAGAACGCTTGGCTATTACAAAAGAAGAATTATACAGAATGCTGGCTCACGAG
Seq A exon
GATTTACGGAAAGCCGCAGTCCTCATATTCGCAAATAAGCAGGATCTGAAAGGGTGCATGACGGCGGCCGAGATCTCCAAGTACCTCACCCTCAGTTCCATTAGGGACCACCCGTGGCACATCCAGTCGTGCTGTGCGCTCACAGGAGAAGG
Seq C2 exon
GTTATGCCAAGGTCTAGAGTGGATGACCTCCAGGATCGGTGTGAGATAATCTTTTTGGTGAAAAAGACTTCTCTATTTATTCGGTGACATGAACATTTTTCCTAATACCTTTGGCTGCTAAGGCAGCAGCATGTTTAATTTATGACAACACAAACCTCCAAGTGACGCTTGAATCAAGTGCCACTGTACTGGAACATAAAGATGGTTTCTTACCTTTGTTTCAAATGTACTAATCTCAGTCGGACGAGCATAACGTGTGACTATGTTGTAGCAGCTGGACTCTAATGACTCTGTGTATTCTGATTACTCAGTGACTGCCTTGTAAAAACCATTTGTCGTCTATTTCCTGTTATCTGGTTTTGTTATGTCCTTTATAACCGGTTTCTCACATATGGCCGCCACTTCCTTCTGAGGTACTTACTGGCTTGACAGAACAGTAGTGAGGATCGTCTTTTATTTATCCAGCATGAAGCATTCTTTTCTCTACAAACCTTTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018714-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(28.4=100)
C2:
PF0002516=Arf=PD(6.8=70.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACAGAGAACGCTTGGCT
R:
AGTGGCACTTGATTCAAGCGT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]