GgaEX6018721 @ galGal3
Exon Skipping
Gene
ENSGALG00000008557 | E1BQL0_CHICK
Description
NA
Coordinates
chr2:19008118-19011120:-
Coord C1 exon
chr2:19011037-19011120
Coord A exon
chr2:19009248-19009399
Coord C2 exon
chr2:19008118-19008163
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATATTCTAAATTTCTTCTAGGAT
3' ss Score
9.54
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
TTCATCATTCTTGTGGTTGACAGCATTGACAGAGAGCGACTTTCTATTACAAAAGAAGAGCTTTATAGAATGCTGGCTCATGAG
Seq A exon
GATTTACGGAAGGCTGCAGTTCTCATTTTTGCAAACAAGCAGGACATGAAGGGTTGCATGACAGCTGCTGAGATATCTGCATACCTCACCCTTAGCTCCATAAAGGATCATCCATGGCACATTCAGTCTTGTTGCGCTTTGACAGGAGAAGG
Seq C2 exon
GTTATGCCAAGGCTTGGAGTGGATGACCTCCCGCATTGGAGTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(28.4=100)
C2:
PF0002516=Arf=PD(6.8=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCATTCTTGTGGTTGACAGC
R:
TCTCACTCCAATGCGGGA
Band lengths:
130-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]