BtaEX6064003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043964 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr13:20610455-20613350:+
Coord C1 exon
chr13:20610455-20610538
Coord A exon
chr13:20611922-20612073
Coord C2 exon
chr13:20613085-20613350
Length
152 bp
Sequences
Splice sites
3' ss Seq
AGATTTCATGTTGATTGCAGGAT
3' ss Score
5.2
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTCATCATTCTTGTGGTTGATAGCATTGACAGGGAACGACTAGCTATTACGAAAGAAGAATTATACAGAATGTTGGCTCACGAG
Seq A exon
GATTTACGGAAGGCCGCAGTCCTTATCTTTGCCAATAAACAGGATATGAAAGGGTGTATGACAGCAGCTGAAATCTCTAAATACCTCACCCTCAGCTCAATTAAGGATCATCCATGGCACATTCAGTCCTGCTGTGCTTTAACAGGAGAAGG
Seq C2 exon
GTTATGCCAAGGTCTAGAGTGGATGACCTCCCGGATTGGTGTGAGATAACTTTTTTGCTCGAAAGAGACTCTATTTATTCTGTGACATGAACCTAGTACATTTGGCTGCTAAAGCAGCAGCATGTTTAATTAATTTATAACAACACAAACCTCTGTGAGCAACACTTGAATCAAGTGCAGCTGAACTGGAACATAAAAGATTTTTTCTTAACTTTTTTTTAATGCACTAATCTTCAGTTGGATAAACATAATGTATAACTGTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043964-'10-5,'10-4,11-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100),PF0231712=Octopine_DH=FE(22.7=100)
A:
PF0002516=Arf=FE(28.4=100),PF0231712=Octopine_DH=PD(27.7=64.7)
C2:
PF0002516=Arf=PD(6.8=70.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGACAGGGAACGACTAGC
R:
TGTTCCAGTTCAGCTGCACTT
Band lengths:
255-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]