RnoEX0011636 @ rn6
Exon Skipping
Gene
ENSRNOG00000036880 | Arl5c
Description
ADP-ribosylation factor like GTPase 5C [Source:RGD Symbol;Acc:1563128]
Coordinates
chr10:85941176-85944833:-
Coord C1 exon
chr10:85944750-85944833
Coord A exon
chr10:85943622-85943773
Coord C2 exon
chr10:85941176-85941936
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGGGCTGCTCTTCTCATAGGCA
3' ss Score
7.85
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTTGTCATCCTTGTGATAGATAGTACTGACCGGAATCGGCTGTCGACCTCCCGGGAGGAGCTGTATAAGATCCTGGCCCATGAG
Seq A exon
GCACTTCAGGATGCCTCAGTGCTGATCTTCGCCAACAAGCAGGATGTGAAAGACTCCATGACCACAGCAGAGATCTCCCAATTTCTCACACTCAGTGCCATCAAAGACCACCCGTGGCATATCCAGGGCTGCTGTGCTCTCACAGGAGAAGG
Seq C2 exon
GTTGCTGGCTGGGCTCCAGTGGATGCACTCTCAGGCCACTACCAACTGATGTCCCAGCCCAAGGCTAACCGGAAGCCACATGGTTAGCACCAGTGAGAAGCACCAGTCATTTGTTGGTGGAACAAGGGTGGTTATAGACAGAGAGATTACTACAGTCCTCTCAACTGTCACCAAGAACTGGATCAAAGACTTCAAGTTGGTGCAGACAGGACTACAGATGAAACTGCCCCTCCCCCCAACTCCATCACTGCAGGTGTGTGGAGACATCAGGGAACTCCTGGGGGTACTGGGGACATCAGGTCTCTCCCAGCCCTCACCTTCTGTCTGCCCGGCAAGCAAGAGATCTTCGACATTGTTCCATATCCACTGGACGAAGGAGATTCTGATAAAAGAGGCGATAGGACCTGGCCAAAAACTGGGGGGGTGGGGGTGGAGAGTTGGTGAATGGGAAGATAGAACATTCCAGACAGACGCAGTCCTCCACACTGCAGAATTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036880-'8-13,'8-12,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(15.3=100)
A:
PF0002516=Arf=FE(28.4=100)
C2:
PF0002516=Arf=PD(6.8=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTATAAGATCCTGGCCCA
R:
TCTGTAGTCCTGTCTGCACCA
Band lengths:
244-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]