DreEX0015938 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16813692-16818868:+
Coord C1 exon
chr3:16813692-16813799
Coord A exon
chr3:16817294-16817311
Coord C2 exon
chr3:16818751-16818868
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGATTACCTTTCAAGCCA
3' ss Score
4.21
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGAACGCAAAACTTTGGGGGAATCCATGTGGGTAACGGCCCAACAGAGGACGAAGCTGAGATAATCCAGCATGACCAGCTTTCCCAAAACACAGAAGAGGAGCCTGAG
Seq A exon
CCATCAGAGGAGGAAGTG
Seq C2 exon
TTTAATTTTGCAGATGAAGCAGTGCATCAAGCCATTCACACTATAGAATACTGCTTGGGCTGCATCTCAAACACTGCGTCTTATCTACGGCTCTGGGCGCTGAGTCTGGCTCATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(0.6=100)
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGACCAGCTTTCCCAA
R:
CAGTGTTTGAGATGCAGCCCA
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]