DreEX0015945 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7577539-7587551:-
Coord C1 exon
chr24:7587444-7587551
Coord A exon
chr24:7582082-7582189
Coord C2 exon
chr24:7577539-7577556
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCCCGGACTCACCCAACAGGGC
3' ss Score
8.21
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGGGATTCAGTCTCTGTTGGTGGTGATAGCTTTAGCCTGTGTGCCAGTTATGCTGGTGGTGAAGACTATGATCCTGCGCCGTCAGCACTTGTGGAAGAAGCACCTG
Seq A exon
GGCACACAGAAGTTCGGTGGCGTCCGGGTCGGAAATGGGCCTACGGAGGACGAGGCAGAGATCATTGACCATGACCAGCTCTCACAACACTCAGAGGAAGGTGATGAG
Seq C2 exon
CATTCAGAGGAAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-'19-24,'19-23,20-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.444 C2=0.667
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
PF0149614=V_ATPase_I=FE(4.3=100)
C2:
PF0149614=V_ATPase_I=FE(0.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]