GgaEX6027564 @ galGal3
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4601047-4606806:+
Coord C1 exon
chr27:4601047-4601154
Coord A exon
chr27:4604377-4604484
Coord C2 exon
chr27:4606789-4606806
Length
108 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTGTTCATGCATTAGGGA
3' ss Score
5.21
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AAAGGACTCCAGTGTTTCCTTGTGGTGGTGGCATTACTGTGCGTGCCGTGGATGCTGGTAGCTAAACCTCTGGTCCTTCGCCACCAGTATTTAAGGAGAAAGCACTTG
Seq A exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
Seq C2 exon
TTCAAACAGATGTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'21-32,'21-27,23-32=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.228 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.5=100)
A:
PF0149614=V_ATPase_I=FE(4.5=100)
C2:
PF0149614=V_ATPase_I=FE(0.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]