HsaEX0006965 @ hg38
Exon Skipping
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase H+ transporting V0 subunit a1 [Source:HGNC Symbol;Acc:HGNC:865]
Coordinates
chr17:42501197-42513978:+
Coord C1 exon
chr17:42501197-42501304
Coord A exon
chr17:42507520-42507627
Coord C2 exon
chr17:42513861-42513978
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTTCATCTGTGTAGGGA
3' ss Score
9.22
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTGGTAGTGGTTGCACTACTGTGTGTACCTTGGATGCTGCTGTTTAAACCATTGGTCCTTCGCCGTCAGTATTTGAGGAGAAAGCATTTG
Seq A exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCACTCAGAGGACGCAGACGAG
Seq C2 exon
TTTGACTTTGGGGACACCATGGTCCACCAGGCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACTGCCTCCTACTTGCGGCTCTGGGCCCTCAGCCTCGCTCATGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627_MULTIEX1-2/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(19.6=100)
A:
PF0149614=V_ATPase_I=FE(19.6=100)
C2:
PF0149614=V_ATPase_I=FE(21.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGTGTTTCCTGGTAGTGGT
R:
GCATGAGCGAGGCTGAGG
Band lengths:
218-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development