BtaEX0004972 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43234223-43244382:+
Coord C1 exon
chr19:43234223-43234330
Coord A exon
chr19:43238936-43239043
Coord C2 exon
chr19:43244265-43244382
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTTCATCTGTGTAGGGA
3' ss Score
9.22
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTGGTAGTGGTTGCACTGCTGTGTGTCCCTTGGATGCTACTGTTTAAACCACTGGTCCTTCGCCGTCAGTATTTGAGGAGGAAGCATTTG
Seq A exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCATTCAGAGGACGCAGAGGAG
Seq C2 exon
TTTGATTTTGGGGACACCATGGTGCACCAGGCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACCGCCTCCTACCTGCGGCTCTGGGCCCTCAGCCTCGCTCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218_MULTIEX2-1/5=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(4.4=100)
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAATTCAGTGTTTCCTGGT
R:
GTGCATGAGCGAGGCTGAG
Band lengths:
226-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development