BtaEX0004975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43234223-43250836:+
Coord C1 exon
chr19:43234223-43234330
Coord A exon
chr19:43244677-43244848
Coord C2 exon
chr19:43250240-43250836
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCCCCATCCCCAGAGT
3' ss Score
10.5
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AAAGGAATTCAGTGTTTCCTGGTAGTGGTTGCACTGCTGTGTGTCCCTTGGATGCTACTGTTTAAACCACTGGTCCTTCGCCGTCAGTATTTGAGGAGGAAGCATTTG
Seq A exon
AGTTGTCCGAGGTGCTTTGGACCATGGTGATCCACATCGGCCTGAAGGTGAAGAGCCTGGCCGGGGGCTTGGCGCTGTTCTTCATCTTTGCCGCCTTCGCCACCCTGACTGTGGCCATCCTCCTGATCATGGAGGGCCTCTCAGCCTTTCTCCATGCGCTGCGGTTACACTG
Seq C2 exon
GGTGGAGTTCCAGAACAAGTTCTACAGCGGGACTGGCTTCAAGTTCCTGCCTTTCTCCTTTGAGCACATCCGGGAAGGGAAGTTTGATGACTGAGCGCCCAAGGGGCTGTGTGCCCGGCTGCCCTCTGCTCCCCGCCACGGTGGTTAGCTGTGCTCCGCTTGCCTGCTGGTTGTGATCCCTGGGTGTCAGGGCACCTGTGTCATCCCCATCCCCTACCCCCAGCCACCTGTGAGGCATTTAGCTCGATCCAGGTCCCCCAGCTCCCCCTGGTCCCCCGCCACCCGCAGCTTGGTGTGTGGTAGTGTAGTGGTATTCTAGAGAAGCTACGCCCTGACGGTCACTCACATCCACTCACCCTGGGCACCCAGCCTGCCCTCCCAGCCTCTGTCTCATTCTTTCTTTGCCCCCTGGTGGTGAACGCATTTGTGCATTTACACGAGAGCCAAGAGCACTTAGAGGGGGGGCCCTCCACCGTCCACACCCAGACTTTGAGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218_MULTIEX2-4/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(7.1=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGTCAGTATTTGAGGAGG
R:
GTAGGGGATGGGGATGACACA
Band lengths:
247-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development