MmuEX6089794 @ mm10
Exon Skipping
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:101055026-101063719:+
Coord C1 exon
chr11:101055026-101055143
Coord A exon
chr11:101055434-101055605
Coord C2 exon
chr11:101062312-101063719
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTCCCCACCCCCAGAGC
3' ss Score
9.83
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGTTGTATCTCCAACACCGCGTCGTACCTGCGACTCTGGGCCCTCAGCCTGGCCCACGCAC
Seq A exon
AGCTCTCTGAAGTACTTTGGACCATGGTGATCCACATTGGCCTGCACGTCCGGAGTTTGGCCGGGGGTCTAGGGCTGTTTTTCATCTTCGCCGCCTTTGCCACGCTGACCGTGGCTATCCTGCTGATCATGGAGGGCCTCTCGGCCTTCCTCCACGCGCTGCGGTTACACTG
Seq C2 exon
GGTGGAGTTCCAGAACAAATTCTACACTGGGACTGGCTTCAAGTTCCTCCCCTTCTCCTTTGAGCACATTCGGGAAGGGAAGTTTGATGAGTGAGTCTGAGGCAGGGCGCATGCCCAGAGCAGCTCCCCTGCCCGTCTCCACAGTGATCAGCTGTGTCTCTCTTGCCTGCTGGTTGTGATCCCTGGATGCCTGGGCCTTTGTGTCGCCCTGCAACCCCTTGTCCCTGCTGTGACTCACTTAGGTAGTGCTGGCCTTGCCTCGGTCTCTCTACCCCAAAACTTTGGATTGAATGCTGAATGACTGTGCCTGATACTCACCCATCCCCACGGCACCGGCTAGGCCCCTTGGCCCCCCAGACAGACAGCCCTGTTCCACCCCCTGCTGGTGAGCCAACCTGCACAGCCACATCGGGGCACAGAGCCCTCAGGATGCAAGGGATCCCTCTTCAGTCCAGGAGTTCTTGGTCACACCTTGGAGGAGGATGGTAATTGGTCCTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-'56-49,'56-46,57-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(7.1=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTATCTCCAACACCGCGT
R:
CATCCAGGGATCACAACCAGC
Band lengths:
249-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types