GgaEX1010034 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4951241-4958104:+
Coord C1 exon
chr27:4951241-4951358
Coord A exon
chr27:4951817-4951988
Coord C2 exon
chr27:4956798-4958104
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTTTCTCCTGGCAGAGC
3' ss Score
11.24
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTGACTTTGCTGACACTGTGGTGTACCAGGCCATCCACACTATTGAGTACTGCCTGGGGTGCATCTCCAACACTGCGTCCTACTTGAGGCTCTGGGCTCTCAGCTTAGCCCATGCAC
Seq A exon
AGCTCTCGGAGGTGCTCTGGACCATGGTGATCCACACTGGGCTCAGCGTGAGGAGTCTGGCTGGAGGCTTTGGCCTTGTCTTCATTTTTGCTGCTTTTGCTACCCTGACGGTAGCGATTCTCCTGGTCATGGAGGGCCTGTCTGCTTTCCTCCATGCTCTTCGCTTGCACTG
Seq C2 exon
GATCGAGTTCCAGAACAAGTTCTACACGGGAACGGGCTTCAAGTTCCTGCCGTTCTCCTTTGACCCCATCCGCGAGGGGAAGTTTGACGATTAGCCTCCCCTGTGCTTTGTGTCCCGGCTGTGTCCCCGTAGTGAATGTAACTTATTGCAGCAGTCTGAGTGTTACCGTGAAGTCTGGGAGCCGCGAGCTTTGACACCCCCTGGTTACGGAGCGATGCGCGATGAAAGAAACTTCTTCCTTAAGTTGCCGCTGCCGCGGGTCGCTGCGCTGTGGCTGTGCTGCCGTGCTGTGAATTCCCTGCCAGCTCCGCGGGGTGCCGTGGGAATAGCGCAGCTGCGGCGGAGCGGGCGTTGGAGCACGTGGAGCGGAGGGCGCGGTGCCTCCAACCCGCACGAAGCTTCCGGCTCGGGAAAGAGGAGGCGGAGGGTTTGGGGTGCGGTTCCTCCGCGTCTTCCCGAAGGAGGGCAGCGGAGCCGCACGGAGCGCTTCTCCCCGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(7.1=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTTGCTGACACTGTGGT
R:
CATTCACTACGGGGACACAGC
Band lengths:
254-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]