RnoEX0013254 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88959731-88967732:+
Coord C1 exon
chr10:88959731-88959848
Coord A exon
chr10:88960152-88960323
Coord C2 exon
chr10:88966319-88967732
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGCCCCCCCCCCCCCCCCAGAGC
3' ss Score
11.28
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGCTGCATCTCCAACACTGCGTCCTACCTGCGGCTCTGGGCCCTCAGCCTGGCCCATGCAC
Seq A exon
AGCTCTCTGAAGTACTCTGGACCATGGTGATCCACATCGGCCTGCATGTCCGGAGTCTGGCAGGGGGACTGGGGCTGTTTTTCATCTTCGCTGCCTTTGCCACCCTGACCGTGGCCATCCTGCTGATCATGGAAGGCCTCTCAGCCTTCCTCCACGCACTGCGATTACACTG
Seq C2 exon
GGTGGAATTCCAGAACAAATTCTACACTGGGACTGGTTTCAAGTTCCTCCCCTTCTCCTTTGAGCACATTCGGGAAGGGAAGTTTGATGAGTGAGTCTCAGGCAGGGCGCATGCTCAGAGCAGCTCTCCTGCCTGCCTCTACAGTGACTGTGTCTCTTGCCTGCTGGTTGTGATCCCTGGATACTCGGGCGTTTGTGTCACCCTACAACCCCTGTCCCCGCTGTGACTCATTTAGGTAGTGCTGGCCTTCCCTGGGTCTCTTTATCCCAAGCCTTGGGTGTTACGTACAGACTTTCGACTGAGAGCTGGATGGCTGTGCCTGATACCCACCCATCCCCATGGCACCACTTGGCCTCCTGGCCTCCAGACAGATAGCCCTATTCCATCCCCTAATGGTGAGCCAACCTGCACAGACACATAGGGGCACGGAGCCCTCAGGATGCAAGGGGTCCCTCATCAGTCCAGGAGTTCTTGGTCACGCCTTGGAGGAAGATGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'48-53,'48-47,49-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.9=100)
A:
PF0149614=V_ATPase_I=FE(7.1=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAGTACTGCTTGGGCTGC
R:
ATCACAACCAGCAGGCAAGAG
Band lengths:
250-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]