DreEX0015949 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7566690-7574959:-
Coord C1 exon
chr24:7574842-7574959
Coord A exon
chr24:7572842-7573013
Coord C2 exon
chr24:7566690-7567077
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGATTTTTTGTCTCTATCAGAGT
3' ss Score
7.89
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TTTAACTTTGGAGACATGGCTGTTCATCAGGCCATTCACACTATAGAGTATTGCCTGGGCTGCATCTCCAACACGGCCTCATACCTGCGACTCTGGGCCCTTAGTTTGGCTCACGCTC
Seq A exon
AGTTGTCTGAGGTGCTTTGGGGAATGGTAATGCGTCTTGGACTGTCCTCTAGAAGTGGTGGGGGATTCTTTGGCTTGTCTATCATTTTCTCTGCCTTTGCAACGCTAACAGTGTGCATCTTACTCATCATGGAGGGATTGTCTGCCTTCTTGCATGCTCTGCGCTTGCATTG
Seq C2 exon
GGTGGAGTTCCAGAACAAATTCTACACAGGACAGGGCTTCAAGTTTGTCCCGTTTTCCTTCGAGAGCATCCTAGAGGGTCGATTTGACGAATGAGAGCTACTAACCATCTGAAATCTGACCAATTCCCTTTCCTGCATGGATCCCATCTCGCTCTGTCCTCTGCAGAAGCAGTGCTGTCTGGTGAAGTGTTTGTAAAATGTGACCCCTGACCTCTAAATGCACCTTTTTCCAGAGTGCTTATTTGAGATATGTTGTGTTCTGTGAGCCTTTTTTCTAGATTTATGGCCCCACTTGACGTAACAGTCCCTCAAAGCAGCGTATTAACTATAATTGATGTTACATAATGTCAGATGGGTGAAAATCAAGCAGTGTGTAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(7.1=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=65.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTGCCTGGGCTGCATCTC
R:
CTTCACCAGACAGCACTGCTT
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]