HsaEX0006962 @ hg19
Exon Skipping
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase, H+ transporting, lysosomal V0 subunit a1 [Source:HGNC Symbol;Acc:865]
Coordinates
chr17:40665879-40674596:+
Coord C1 exon
chr17:40665879-40665996
Coord A exon
chr17:40666307-40666478
Coord C2 exon
chr17:40673045-40674596
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCTCCCATTCCCCAGAGC
3' ss Score
9.35
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
TTTGACTTTGGGGACACCATGGTCCACCAGGCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACTGCCTCCTACTTGCGGCTCTGGGCCCTCAGCCTCGCTCATGCGC
Seq A exon
AGCTGTCTGAGGTGCTTTGGACCATGGTGATCCACATCGGCCTGAGCGTGAAGAGCTTGGCGGGAGGTTTGGTGCTGTTCTTCTTCTTCACTGCCTTTGCCACCCTGACCGTGGCCATCCTCCTGATCATGGAGGGCCTCTCGGCCTTTCTCCACGCACTGCGCTTACACTG
Seq C2 exon
GGTTGAGTTCCAGAATAAATTCTACAGCGGGACCGGTTTCAAGTTCTTACCCTTCTCCTTCGAGCATATTCGGGAAGGGAAGTTTGAAGAGTGAGTCCCTGTGAGGGCCGTGTGCCCCATGCTACCCTCCCCGCCTCCCTCCACAGTGATCAGCTGTGCCTCTCTGCCTGTTGGTTGTGATCTGTGGGCACCAGCTCATTCGTGTCACCCTGTCTGTGAGTCATTTAGATAGAATAGTCCTCCTTGGGTCTCCCACCACCCCTAGCTTTGTGTGTAGTGTAGTGATTTTCTGGCTGTCACTCATACTCACTGGGCACCAGCCTTGCCCTCTTAGCCTCCATCCATCCAGACAGCCCTTCCCACCTCCTGGTGGTGAGCCAGTCTGCATTCCCACGCCATCCCAAAGCCCTTTCATCTTCCCCGTGCATTGTAGATGGAAGGAGCACCCATGCCATTCACATCTAGACTTTGAGTTCCCTGCATCTGCCACCGTAGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(21.8=100)
A:
PF0149614=V_ATPase_I=FE(12.0=100)
C2:
PF0149614=V_ATPase_I=PD(13.4=68.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCACACCATCGAGTAC
R:
AGAGAGGCACAGCTGATCACT
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)