DreEX0015960 @ danRer10
Exon Skipping
Gene
ENSDARG00000035538 | atp6v0a2a
Description
ATPase, H+ transporting, lysosomal V0 subunit a2a [Source:ZFIN;Acc:ZDB-GENE-091113-4]
Coordinates
chr10:8038948-8042739:-
Coord C1 exon
chr10:8042621-8042739
Coord A exon
chr10:8040894-8041104
Coord C2 exon
chr10:8038948-8039067
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTTCACTATGTCTCTCCAGGCA
3' ss Score
9.15
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATCTGGAACATGGCCGTGAACCGCCTTACCTTCCTCAACTCCTACAAGATGAAGATGTCTGTGATCATCGGCGTTGTCCACATGAGCTTCGGTGTTGTGCTCAGTGTCTTTAACCACCT
Seq A exon
GCACTTCCGACAGAAGTACAAGATCTATCTCCTTTTTCTTCCTGAGCTGCTCTTTCTGCTTTGCCTCTTTGGGTACTTGGCCTTTATGATCTTTTACAAATGGCTGGCGTACACAGCACGAGACTCACAGCTGGCACCGAGTATCCTCATCCACTTCATCAACATGTTCCTAATGCAGGCCAATGCCACCTCACCTCTTTATCCCGGCCAG
Seq C2 exon
ATGGGACTGCAGGTGTTTCTGGTGGTGGTGGCGCTGCTGTCGGTGCCAGTGCTGCTGCTTGGCAAACCTCTGTATCTGTACTGGCTGCATCACGGCGGGAAGAGTCTGGGGATCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035538_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(8.7=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGAACATGGCCGTGAAC
R:
CCTGTGGATCCCCAGACTCTT
Band lengths:
239-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]