DreEX0017722 @ danRer10
Exon Skipping
Gene
ENSDARG00000012694 | c3a.1
Description
complement component c3a, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-35]
Coordinates
chr1:55490385-55493599:-
Coord C1 exon
chr1:55493470-55493599
Coord A exon
chr1:55490714-55490794
Coord C2 exon
chr1:55490385-55490582
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGATGACTTGTCCTCTAGACC
3' ss Score
6.79
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
ATCTGGGATGTCATTGAGAAGCATGACACCGGTTGTACAGCAGGAGGTGGAAGAGATGTTATGGGGGTTTTCAGCGATGCAGGGCTGATGTTTGAGTCGAACACTGCAGGAGGAACCGACACCAGATTAA
Seq A exon
ACCCCGAGTGTCCTGACCCTCCAAAGAGAAGAAGAAGAAGAAGAGAATCTGAGAATCTTCGCACAATCACGGCAACACTGG
Seq C2 exon
CTGGTCAGTACGCTGATGGACAGAGACAGTGCTGCATTGATGGGATGAAGGATAATAAGCTGGGCTACACATGTGAACGCAGAGCCACGTATATTGGAGATGGACCAGAGTGTGTCAAGGCCTTCCTGCACTGCTGCGATGAGATGAAAAAGCGCAAAAACATAAAGACCGAAGAGGAGGAGATGATTCTGGCTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012694-'17-21,'17-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.714 C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0182113=ANATO=WD(100=53.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGCTGATGTTTGAGTC
R:
AGGAAGGCCTTGACACACTCT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]