RnoEX0015690 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9727327-9728226:+
Coord C1 exon
chr9:9727327-9727456
Coord A exon
chr9:9727776-9727847
Coord C2 exon
chr9:9728026-9728226
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTTTCTCCCTTAGATC
3' ss Score
12.68
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATCTGGGATGTAGTAGAGAAGGCAGACATTGGCTGCACCCCAGGCAGTGGGAAGAACTATGCGGGTGTCTTCATGGATGCTGGCCTGACCTTCAAGACAAACCAAGGCCTGCAGACTGATCAGAGAGAAG
Seq A exon
ATCCTGAGTGCGCCAAGCCAGCTGCCCGCCGCCGTCGCTCAGTGCAGTTGATGGAAAGGAGGATGGACAAAG
Seq C2 exon
CTGGTCAGTACACCGACAAGGGTCTGCGGAAGTGTTGTGAGGATGGCATGCGTGATATCCCTATGAAGTACAGCTGCCAGCGCCGGGCTCGCCTCATCACCCAGGGCGAGAGCTGCCTGAAGGCCTTCATGGACTGCTGCAACTATATCACCAAGCTTCGTGAGCAGCACAGAAGAGACCATGTGCTGGGCCTGGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'18-22,'18-20,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.760 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0182113=ANATO=WD(100=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCTGCAGACTGATCAG
R:
AGTTGCAGCAGTCCATGAAGG
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]