GgaEX6047431 @ galGal3
Exon Skipping
Gene
ENSGALG00000011509 | C3
Description
NA
Coordinates
chrUn_random:18874902-18875711:-
Coord C1 exon
chrUn_random:18875582-18875711
Coord A exon
chrUn_random:18875282-18875353
Coord C2 exon
chrUn_random:18874902-18875103
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAAGCCACCTTTATCCCCAGAGG
3' ss Score
5.5
5' ss Seq
AGAGTAGGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GTGTGGGACACAGTGGAGAACAGCGACATCGGCTGCACGCCGGGCAGTGGGAGGAACCACGTGGGGGTCTTCGCCGATGCCGGCCTCAGCCTGACTTCAAACGTGAACATCAACACGGAGCAGAGAAGTG
Seq A exon
AGGTCCAGTGTGCAAAGCCTGCAAAACGCAAGCGCCGCTCCGTGAGGCTCATCAAGCACAAGGGCACCAAGA
Seq C2 exon
TGGCCGAGTACAGCGACAAGAACCTGCGCAAGTGCTGTGAGGACGGCATGAAGGAAAACCTGATGGGCTACAGCTGCGAGAAACGGGCCACCTACGTCCTCGATGGCAAAGCCTGCACCGAAGCCTTCCTCAGCTGCTGCCTCTACATCAAGGGCATCCGCGATGAGGAGCGCGAGCTGCAATACGAGCTGGCTCGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011509-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.240 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0182113=ANATO=WD(100=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAGAACAGCGACATCG
R:
GGTTTTCCTTCATGCCGTCCT
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]